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error messages when trying bioinformatics tools

807598Mar 20 2006 — edited Mar 22 2006

Hi all!

I am trying to use a few java-dependent bioinformatics tools from the Terminal.

I recently installed sun JRE 1.5 update 6 and I made it my default java with

update-alternatives --config java

Also, the plugin in Firefox works well.

However, when I start these bioinf softwares from the terminal, I constently receive these errors messages:

/usr/share/themes/Human/gtk-2.0/gtkrc:7: Failed to parse property value " GTK_SHADOW_NONE " for `GtkMenuItem::shadow-type'
/usr/share/themes/Human/gtk-2.0/gtkrc:58: Engine "clearlooks" is unsupported, ignoring
Uncaught error fetching image:
java.lang.NullPointerException
        at sun.awt.image.URLImageSource.getConnection(Unknown Source)
        at sun.awt.image.URLImageSource.getDecoder(Unknown Source)
        at sun.awt.image.InputStreamImageSource.doFetch(Unknown Source)
        at sun.awt.image.ImageFetcher.fetchloop(Unknown Source)
        at sun.awt.image.ImageFetcher.run(Unknown Source)

I am not too sure what to do at this stage!
I would very much appreciate any help!!

Cheers,
Manu

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Locked on Apr 19 2006

Added on Mar 20 2006

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